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Rho family of GTPases

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Rho family of GTPases

For other uses, see Rho GTPase (disambiguation).

The Rho family of GTPases is a family of small (~21 kDa) signaling G protein (more specific, a GTPase), and is a subfamily of the Ras superfamily. The members of the Rho GTPase family have been shown to regulate many aspects of intracellular actin dynamics, and are found in all eukaryotic organisms including yeasts and some plants. Three members of the family have been studied a great deal: Cdc42, Rac1, and RhoA. Rho proteins have been described as "molecular switches" and play a role in cell proliferation, apoptosis, gene expression, and multiple other common cellular functions.[1][2]

History

Identification of the Rho family of GTPases began in the mid-1980s. The first identified Rho member was RhoA, isolated serendipitously in 1985 from a low stringency cDNA screening.[3] Rac1 and Rac2 were next identified in 1989[4] followed by Cdc42 in 1990.[5] Eight additional mammalian Rho members were identified from biological screenings until the late 1990s, a turning point in biology where availability of complete genome sequences allowed full identification of gene families. All eukaryote cells contain Rho GTPase (ranging from 6 in yeast to 20 in mammals). In mammals, the Rho family is thus made of 20 members distributed into eight subfamilies : Rho, Rnd, RhoD/F, RhoH, Rac, Cdc42, RhoU/V and RhoBTB.[1]

As early as 1990, Paterson et al. began injecting active rho protein into Swiss 3T3 cells.[6]

In the 2006 review article released by Bement et al., the spatial zones of rho activation were explained.

As early as the mid-1990s, these processes and the effects of the rho proteins were observed in fibroblasts. In his 1998 review article, a prominent rho-protein researcher, Dr. Alan Hall, compiled evidence showing that not only do fibroblasts form processes based on rho activation, but so do virtually all eukaryotic cells.[7]

Categorization

The Rho family of GTPases belong to the superfamily named ‘Ras-like’ proteins, which consists of over 150 varieties in mammals. Rho proteins sometimes denote some members of the Rho family (RhoA, RhoB, and RhoC), and sometimes refers to all members of the family. This article is about the family as a whole.

In mammals, the Rho family contains 20 members.[1] Almost all research involves the three most common members of the Rho family: Cdc42, Rac1 and RhoA.

Comparison
Rho family member Action on actin filaments
Cdc42 affects filopodia
Rac1 affects lamellipodia
RhoA affects stress fibres

The current 20 members of the Rho family include RhoA, RhoB, RhoC, RhoD, Rif, Rnd1, Rnd2, Rnd3/RhoE, RhoH/TTF, Rac1, Rac2, Rac3, RhoG, Cdc42, TC10 (RhoQ), TCL (RhoJ), Wrch1 (RhoV), Chp/Wrch2 (RhoU), RhoBTB1, RhoBTB2.[1]

Comparison
Subclass Cytoskeletal effect Rho family members
Cdc42 subclass filopodia Cdc42
RhoQ (TC10)
RhoJ (TCL)
RhoUV subclass filopodia and lamellipodia RhoU (Wrch)
RhoV (Chp)
Rac lamellipodia Rac1
Rac2
Rac3
RhoG
RhoBTB protein stability RhoBTB1
RhoBTB2
RhoBTB3
RhoH Rac agonist? RhoH
Rho (subclass) stress fibres and ↑focal adhesions RhoA
RhoB
RhoC
Rnd stress fibres and ↓focal adhesions Rnd1
Rnd2
Rnd3 (RhoE)
RhoF Vesicle transport, filopodia RhoD
RhoF (Rif)

Regulators

Three general classes of regulators of rho protein signaling have been identified: guanine nucleotide exchange factor (GEFs), GTPase-activating proteins (GAPs) and guanine nucleotide dissociation inhibitors (GDIs).[8] GEFs activate Rho proteins by catalyzing the exchange of GDP for GTP. GAPs control the ability of the GTPase to hydrolyze GTP to GDP, controlling the natural rate of movement from the active conformation to the inactive conformation. GDI proteins form a large complex with the rho protein helping to prevent diffusion within the membrane and into the cytosol, thus acting as an anchor and allowing for very specific spatial control of rho activation.[8]

Recent works have unveiled important additional regulatory mechanisms: microRNA (miRNA) regulating post-transcriptional processing of Rho GTPase-encoding mRNAs; palmitoylation and nuclear targeting affecting intracellular distribution; post-translational phosphorylation, transglutamination and AMPylation impacting Rho GTPase signaling; and ubiquitination controlling Rho GTPase protein stability and turnover. These modes of regulation add to the complexity of the Rho GTPase signaling network and allow precise spatiotemporal control of individual Rho GTPases. [9]

Effectors

Each Rho protein affects numerous proteins downstream, all of which have roles in various cell processes. In fact, over 60 targets of the three common Rho GTPases have been found.[10] Two molecules that directly stimulate actin polymerization are the Arp2/3 proteins and the Diaphanous-related formins.[11]

GTPase Effector[2][11]
RhoA Cit, Cnksr1, Diaph1, Diaph2, DgkQ, FlnA, KcnA2, Ktn1, Rtkn1, Rtkn2, Rhpn1, Rhpn2, Itpr1, PlcG1, PI-5-p5K, Pld1, Pkn1, Pkn2, Rock1, Rock2, PrkcA, Ppp1r12A
Rac1 Sra1, IRSp53, PAK1, PAK2, PAK3
Cdc42 Wiskott-Aldrich syndrome protein, N-WASP, IRSp53, Dia2, Dia3, ROCK1, ROCK2

Functions

Rho/Rac proteins are involved in a wide variety of cellular functions such as cell polarity, vesicular trafficking, the cell cycle and transcriptomal dynamics.[2]

Morphology

Animal cells form many different shapes based on their function and location in the body. Rho proteins help cells regulate changes in shape throughout their life-cycle. Before cells can undergo key processes such as budding, mitosis, or locomotion, a certain degree of polarity is required. A ‘polar’ cell is one that has some sort of shape or direction rather than existing as an amorphous, symmetrical shape. For instance, an amoeba becomes polar when it undergoes locomotion and travels from one point to another.

One example of Rho GTPases' role in cell polarity is seen in the much-studied yeast cell. Before the cell can bud, Cdc42 is used to locate the region of the cell’s membrane which will begin to bulge into the new cell. When Cdc42 is removed from the cell, the cell’s outgrowths still form but form in an unorganized manner.[10]

One of the most obvious changes to cell morphology controlled by rho proteins is the formation of lamellipodia and filopodia, the processes that look like fingers or feet, which often propel cells across surfaces. Fibroblasts form processes based on rho activation, but also virtually all eukaryotic cells do so as well.[7]

Study techniques

Much of what is known about cellular morphology changes, and the effects of Rho proteins comes from the creation of a constitutively-active mutation of the protein, e.g., by injecting active rho protein into Swiss 3T3 cells. The proteins are made to be constitutively active using recombinant techniques. In essence, by changing one codon of the protein’s DNA, one amino acid is changed, and, therefore, the conformation of the entire protein is altered into one that resembles the GTP-bound state.[6] After injection into the 3T3 cells, morphological changes ensue — contractions and filopodia.[6]

Because rho proteins are G-proteins and plasma-membrane-bound, their location can be easily controlled. In each situation, whether it be wound-healing, cytokinesis, or budding, the location of the rho activation can be imaged and identified. For example, if a circular hole is inflicted in a spherical cell, Cdc42 and other active rhos are seen in highest concentration around the circumference of the circular injury.[12] One methods of maintaining the spatial zones of activation is, e.g., through anchoring to the actin cytoskeleton, keeping the membrane-bound protein from diffusing away from the region where it is most needed.[12] Another method of maintenance is through the formation of a large complex which is resistant to diffusion and more rigidly bound to the membrane than the rho itself.[12]

Morphogenesis of Dendritic Spines

The morphogenesis of dendritic spines is critical to the induction of Long-Term Potentiation (LTP).[13][14] The morphology of the spine depends on the states of actin, either in globular (G-actin) or filamentous (F-actin) forms. The role of Rho family of GTPases and its effects in the stability of actin and spine motility[15] has important implications for memory. If the dendritic spine is the basic unit of information storage, then the spine’s ability to extend and retract spontaneously has to be constrained. If not, information could be lost. Rho family of GTPases makes significant contributions to the process that stimulates actin polymerization, which in turn increases the size and shape of the spine.[16] Large spines are more stable than smaller ones and may be resistant to modification by additional synaptic activity.[17] Because changes in the shape and size of dendritic spines are correlated with the strength of excitatory synaptic connections and heavily depend on remodeling of its underlying actin cytoskeleton,[18] the specific mechanisms of actin regulation, and therefore the Rho family of GTPases, are integral to the formation, maturation, and plasticity of dendritic spines and to learning and memory.

RhoA Pathway

One of the major Rho GTPases involved in spine morphogenesis is RhoA, a protein whose normal function is to modulate the regulation and timing of cell division. In the context of activity within neurons, RhoA is activated in the following manner: once calcium has entered a cell through NMDA receptors, it binds to calmodulin and activates CaMKII, which leads to the activation of RhoA.[16] The activation of the RhoA protein will activate ROCK, a RhoA kinase, which leads to the stimulation of LIM kinase, which in turn stimulates the protein cofilin. Cofilin's function is to reorganize the actin cytoskeleton of a cell; namely, it depolymerizes actin segments and thus inhibits the growth of growth cones and the repair of axons.[19]

These functions of RhoA provide an interesting comparison with recent findings. A study conducted by Murakoshi et al. in 2011 implicated important roles for the Rho GTPases RhoA and Cdc42 in dendritic spine morphogenesis. Both GTPases were quickly activated in single dendritic spines of CA1 pyramidal neurons in the rat hippocampus during structural plasticity brought on by long term potentiation stimuli. Concurrent RhoA and Cdc42 activation led to a transient increase in spine growth of up to 300% for five minutes, which decayed into a smaller but sustained growth for thirty minutes.[16] The activation of RhoA diffused around the vicinity of the spine undergoing stimulation, and it was determined that RhoA was necessary for the transient phase and most likely the sustained phase as well of spine growth.

Cdc42 Pathway

Another one of the Rho GTPases involved in spine morphogenesis is Cdc42. This protein has been implicated in many different functions including dendritic growth, branching, and branch stability.[20] Calcium influx into the cell through NMDA receptors binds to calmodulin and activates the Ca2+/calmodulin-dependent protein kinases II (CaMKII). In turn, CaMKII is activated and this activates Cdc42, after which no feedback signaling occurs upstream to calcium and CaMKII. If tagged with monomeric enhanced green fluorescent protein, one can see that the activation of Cdc42 is limited to just the stimulated spine of a dendrite. This is because the molecule is continuously activated during plasticity and immediately inactivates after diffusing out of the spine. Despite its compartmentalized activity, Cdc42 is still mobile out of the stimulated spine, just like RhoA. Cdc42 activates PAK, which is a protein kinase that specifically phosphorylates and therefore, inactivates ADF/cofilin.[21] Inactivation of cofilin leads to increased actin polymerization and expansion of the spine’s volume. Activation of Cdc42 is required for this increase in spinal volume to be sustained.

Observed Changes in Structural Plasticity

Murakoshi, Wang, and Yasuda (2011) examined the effects of Rho GTPases’ activation on the structural plasticity of single dendritic spines elucidating differences between the transient and sustained phases.[16]

Transient changes in structural plasticity

Applying a low-frequency train of two-photon glutamate uncaging in a single dendritic spine can elicit rapid activation of both RhoA and Cdc42. During the next two minutes, the volume of the stimulated spine can expand to 300 percent of its original size. However, this change in spine morphology is only temporary; the volume of the spine decreases after five minutes. Administration of C3 transferase, a Rho inhibitor, or Glycyl-H1152, a Rock inhibitor, inhibits the transient expansion of the spine, indicating that activation of the Rho-Rock pathway is required in some way for this process.[16]

Sustained changes in structural plasticity

After the transient changes described above take place, the spine’s volume decreases until it is elevated by 70 to 80 percent of the original volume. This sustained change in structural plasticity will last about thirty minutes. Once again, administration of C3 transferase and Glycyl-H1152 suppressed this growth, suggesting that the Rho-Rock pathway is necessary for more persistent increases in spinal volume. In addition, administration of the Cdc42 binding domain of Wasp or inhibitor targeting Pak1 activation-3 (IPA3) decreases this sustained growth in volume, demonstrating that the Cdc42-Pak pathway is needed for this growth in spinal volume as well. This is important because sustained changes in structural plasticity may provide a mechanism for the encoding, maintenance, and retrieval of memories. The observations made may suggest that Rho GTPases are necessary for these processes.[16]

Movement

In addition to the formation of lamellipodia and filopodia, it has been shown that intracellular concentration and cross-talk between different rho proteins drives the extensions and contractions that cause cellular locomotion. Sakumura et al. proposed a model based on differential equations, which helps explain the activity of rhos and their relationship to motion. This model encompassed the three proteins Cdc42, RhoA, and Rac. Cdc42 was assumed to encourage filopodia elongation and block actin depolymerization. RhoA was considered to encourage actin retraction. Rac was treated to encourage lamellipodia extension but block actin depolymerization. These three proteins, although significantly simplified, covered the key steps in cellular locomotion. Through various mathematical techniques, solutions to the differential equations that described various regions of activity based on intracellular activity were found. The paper concludes by showing that the model predicts that there are a few threshold concentrations that cause interesting effects on the activity of the cell. Below a certain concentration, there is very little activity, causing no extension of the arms and feet of the cell. Above a certain concentration, the rho protein causes a sinusoidal oscillation to occur, much like the extensions and contractions of the lamellipodia and filopodia. In essence, this model predicts that increasing the intracellular concentration of these three key active rho proteins causes an out-of-phase activity of the cell, resulting in extensions and contractions that are also out of phase.[22]

Wound healing

One example of behavior that is modulated by Rho GTPase proteins is in the healing of wounds. Wounds heal differently between young chicks and adult chickens. In young chicks, wounds heal by contraction, much like a draw-string being pulled to close a bag. In older chickens, cells crawl across the wound through locomotion. The actin formation required to close the wounds in young chicks is controlled by Rho GTPase proteins, since, after injection of a bacterial exoenzyme used to block rho and rac activity, the actin polymers do not form, and thus the healing completely fails.[23]

Phagocytosis

Another cellular behavior that is affected by rho proteins is phagocytosis. As with most other types of cell membrane modulation, phagocytosis requires the actin cytoskeleton in order to engulf other items. The actin filaments control the formation of the phagocytic cup, and active Rac1 and Cdc42 have been implicated in this signaling cascade.[24]

Mitosis

Yet another major aspect of cellular behavior that is thought to include rho protein signaling is the process of cell division, mitosis. While it was thought for years that rho GTPase activity is restricted only to actin polymerization and therefore only to cytokinesis, new evidence that shows some activity in microtubule formation and the overall process of mitosis has arisen. This topic is still debated, and there is evidence both for and against for the importance of rho in mitosis.[25]

Applications

Nervous System Regeneration

Because of their implications in cellular motility and shape, rho proteins became a clear target in the study of the growth cones that form during axonal generation and re-generation in the nervous system. Some consider rho proteins to be a potential target for delivery into spinal cord lesions after traumatic injury. Following injury to the spinal cord, the extracellular space becomes inhibitory to the natural efforts neurons undergo to regenerate.

These ‘natural efforts’ include the formation of a growth cone at the proximal end of an injured axon. Newly formed growth cones subsequently attempt to ‘crawl’ across the lesion and are quite sensitive to chemical cues in the extracellular environment. One of the many inhibitory cues includes chondroitin sulfate proteoglycans or CSPGs. Neurons growing in culture increase in their ability to cross over inhibitory CSPG lanes after administration of constitutively-active Cdc42 or Rac1, or dominant negative form (inhibition) of RhoA.[26] This is partly due to the exogenous rho proteins driving cellular locomotion despite the extracellular cues promoting apoptosis and growth cone collapse. It is situations like these that make intracellular modulation of rho proteins the subject of a significant amount of spinal cord research.

Mental Retardation

Rho proteins have also been implicated in mental retardation. Mental retardation occurs in approximately 3% of the population and is characterized by having an IQ of less than 70. Multiple sources have noticed that mental retardation in some cases shows malformation of the dendritic spines, which form the post-synaptic connections between neurons. As expected, the misshapen dendritic spines are sometimes the result of rho protein-signaling modulation. After cloning of various genes implicated in X-linked mental retardation, three genes that have effects on rho signaling were identified, including oligophrenin-1 (GAP protein that stimulates GTPase activity of Rac1, Cdc42, and RhoA), PAK3 (involved with the effects of Rac and Cdc42 on the actin cytoskeleton) and αPIX (a GEF that helps activate Rac1 and Cdc42).[27] Because of the effect of rho signaling on the actin cytoskeleton, genetic malfunctions of a rho protein could explain the irregular morphology of neuronal dendrites seen in many cases of mental retardation.

Cancer

After finding that Ras proteins are mutated in 30% of human cancers, it was suspected that mutated rho proteins are also involved in cancer reproduction, as the signaling pathways involving rho proteins are widely known to play an important role in cancer development.[8] However, Ellenbroek et al. reported in their review that, as of August 2007, no mutations have been found in rho proteins, and only one has been found to be genetically altered.[8] To explain the role of rho pathways without mutation, researchers have now turned to the regulators of rho activity and the levels of expression of the rho proteins for answers.

One way to explain altered signaling in the absence of mutation is through increased expression. Overexpression of RhoA, RhoB, RhoC, Rac1, Rac2, Rac3, RhoE, RhoG, RhoH, and Cdc42 has been shown in multiple types of cancer.[8] This increased presence of so many signaling molecules implies that these proteins promote the cellular functions that become overly active in cancerous cells.

A second target to explain the role of the rho proteins in cancer is their regulatory proteins. Rho proteins are very tightly controlled by a wide variety of sources, and over 60 activators and 70 inactivators have been identified.[10] Multiple GAPs, GDIs, and GEFs have been shown to undergo overexpression, downregulation, or mutation in different types of cancer.[8] As one can imagine, once an upstream signal is changed, the activity of its targets downstream, i.e. the rho proteins, will change in activity.

Ellenbroek et al. outlined a number of different effects of rho activation in cancerous cells. First, in the initiation of the tumor modification of rho activity can suppress apoptosis and therefore contribute to artificial cell longevity. After natural apoptosis is suppressed, abnormal tumor growth can be observed through the loss of polarity in which rho proteins play an integral role. Next, the growing mass can invade across its normal boundaries through the alteration of adhesion proteins potentially caused by rho proteins.[8] Finally, after inhibition of apoptosis, cell polarity and adhesion molecules, the cancerous mass is free to metastasize and spread to other regions of the body.

References

Of note, several mutations in Rho proteins have been identified in large scale sequencing of cancers. These mutations are listed in the Catalogue of Somatic Mutations database (http://www.sanger.ac.uk/genetics/CGP/cosmic/). The functional consequences of these mutations are unknown.

See also

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