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Chromosome 1 (human)

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Title: Chromosome 1 (human)  
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Subject: CD64 (biology), Chromosomes, Lefty (protein), C4b-binding protein, CD16
Collection: Chromosomes, Chromosomes (Human), Genes on Human Chromosome 1
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Chromosome 1 (human)

Chromosome 1 (human)
Pair of human chromosome 1 (after G-banding). One is from mother, one is from father.
Chromosome 1 pair in human male karyogram.
Features
Length (bp) 247,249,719 bp
Number of genes 3,958
Type Autosome
Centromere position 125 Mbp [1]
Identifiers
RefSeq NC_000001
GenBank CM000663
Map of Chromosome 1
Ideogram of human chromosome 1. Mbp means mega base pair. See locus for other notation.

Chromosome 1 is the designation for the largest human chromosome. Humans have two copies of chromosome 1, as they do with all of the autosomes, which are the non-sex chromosomes. Chromosome 1 spans about 249 million nucleotide base pairs, which are the basic units of information for DNA.[2] It represents about 9% of the total DNA in human cells.[3]

Identifying genes on each chromosome is an active area of genetic research. Chromosome 1 is currently thought to have 4,316 genes, exceeding previous predictions based on its size.[2] It was the last completed chromosome, sequenced two decades after the beginning of the Human Genome Project.

Contents

  • Genes 1
    • p-arm 1.1
    • q-arm 1.2
  • Diseases and disorders 2
  • References 3
  • Further reading 4
  • External links 5

Genes

The following are some of the genes located on chromosome 1:

p-arm

  • ACADM: acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain
  • COL11A1: collagen, type XI, alpha 1
  • CPT2: carnitine palmitoyltransferase II
  • DBT: dihydrolipoamide branched chain transacylase E2
  • DIRAS3: DIRAS family, GTP-binding RAS-like 3
  • ESPN: espin (autosomal recessive deafness 36)
  • GALE: UDP-galactose-4-epimerase
  • GJB3: gap junction protein, beta 3, 31kDa (connexin 31)
  • HMGCL: 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)
  • KCNQ4: potassium voltage-gated channel, KQT-like subfamily, member 4
  • KIF1B: kinesin family member 1B
  • MFN2: mitofusin 2
  • MTHFR: 5,10-methylenetetrahydrofolate reductase (NADPH)
  • MUTYH: mutY homolog (E. coli)
  • NGF: Nerve Growth Factor
  • PARK7: Parkinson disease (autosomal recessive, early onset) 7
  • PINK1: PTEN induced putative kinase 1
  • PLOD1: procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1
  • TACSTD2: tumour-associated calcium signal transducer 2
  • TSHB: thyroid stimulating hormone, beta
  • UROD: uroporphyrinogen decarboxylase (the gene for porphyria cutanea tarda)

q-arm

Chromosome 1 contains 263 million base pairs[4]

Diseases and disorders

There are 890 known diseases related to this chromosome. Some of these diseases are hearing loss, Alzheimer disease, glaucoma and breast cancer. Rearrangements and mutations of chromosome 1 are prevalent in cancer and many other diseases. Patterns of sequence variation reveal signals of recent selection in specific genes that may contribute to human fitness, and also in regions where no function is evident. The following diseases are some of those related to genes on chromosome 1 (which contains the most known genetic diseases of any human chromosome):

References

  1. ^ "Table 2.3: Human chromosome groups". Human Molecular Genetics (2nd ed.). Garland Science. 1999. 
  2. ^ a b http://vega.sanger.ac.uk/Homo_sapiens/mapview?chr=1 Chromosome size and number of genes derived from this database, retrieved 2012-03-11.
  3. ^ Gregory SG, Barlow KF, McLay KE; et al. (May 2006). "The DNA sequence and biological annotation of human chromosome 1". Nature 441 (7091): 315–21.  
  4. ^ Chromosome 1

Further reading

  • Murphy WJ, Fronicke L, O'Brien SJ, Stanyon R; Frönicke; O'Brien; Stanyon (2003). "The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals". Genome Res 13 (8): 1880–8.  
  • Revera, M.; Van Der Merwe, L; et al. (2007). "Long-term follow-up of R403WMHY7 and R92WTNNT2 HCM families: mutations determine left ventricular dimensions but not wall thickness during disease progression". Cardiovascular Journal of Africa 18 (3): 146–153.  
  • Schutte BC, Carpten JD, Forus A, Gregory SG, Horii A, White PS; Carpten; Forus; Gregory; Horii; White (2001). "Report and abstracts of the sixth international workshop on human chromosome 1 mapping 2000. Iowa City, Iowa, USA. 30 September-3 October 2000". Cytogenet Cell Genet 92 (1–2): 23–41.  

External links

  • National Institutes of Health. "Chromosome 1". Genetics Home Reference. Retrieved May 17, 2006. 
  • Reuters Wed May 17, 2006
  • Final genome 'chapter' published BBC NEWS
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